The Antimicrobial Peptide Database (APD) contains 2722 antimicrobial peptides from six kingdoms (272 bacteriocins from bacteria, 4 from archaea, 8 from protists, 13 from fungi, 335 from plants, and 2043 from animals) with the following activity:
This comprehensive database for antimicrobial peptides is manually curated based on a set of data-collection criteria (see About).
There are 113 human host defense peptides, 1017 active peptides from amphibians, 100 fish peptides, 22 reptile peptides, 38 from birds, 463 from arthropods, 136 from chelicerata, 44 from crustaceans, 6 from myriapods, 273 from insects, 43 from spiders, 65 from scorpions, 34 from molluscs; and more. A Universal Bacterial Peptide Nomenclature; A Unified Peptide Classification
Antiviral Peptides (Anti-HIV)
Of the 373 unique 3D structures annotated for host defense peptides in the APD, 264 with coordinates deposited in the Protein Data Bank (PDB) can be directly rotated, zoomed, and viewed. Top left: Amphibian magainin II; Top right: bovine lactoferricin; Bottom left: plant PsD1; Bottom right: bovine indolicidin. A unified Peptide 3D Structure Classification
This original database consists of a pipeline of search functions for innate immune peptides. You can search for peptide information using APD ID, peptide name, amino acid sequence, peptide motif, chemical modification, length, charge, hydrophobic content, PDB ID, 3D structure, methods for structural determination, peptide source organism, peptide family name, life domain/kingdom (bacteria, archaea, protists, fungi, plants, animals), biological activity (see the links above), synergistic effects, target microbes, molecular targets, mechanism of action, contributing authors, and year of publication.
Antimicrobial Peptides in 2014
. Wang, G., Li, X. and Wang, Z. (2016) APD3: the antimicrobial peptide database as a tool for research and education.
Nucleic Acids Research 44, D1087-D1093. Paper PDF
. Wang, G., Li, X. and Wang, Z. (2009) APD2: the updated antimicrobial peptide database and its application in peptide design.
Nucleic Acids Research 37, D933-D937. Paper PDF
. Wang, Z. and Wang, G. (2004) APD: the antimicrobial peptide database.
Nucleic Acids Research 32, D590-D592. Paper PDF